PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_09735A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 1120aa    MW: 124636 Da    PI: 8.9624
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_09735AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-074682341
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                                W+++E e+++ a +++G++ W+++a+ +   Rt +++ 
  Oropetium_20150105_09735A 46 QWSKDELERFYGAYRKYGKD-WRKVASAIR-DRTSEMVE 82
                               6*****************99.*********.***99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.91E-104192IPR009057Homeodomain-like
SMARTSM007177.5E-44391IPR001005SANT/Myb domain
PfamPF002492.5E-64686IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-54685IPR009057Homeodomain-like
CDDcd001672.03E-54789No hitNo description
PfamPF065842.9E-33585685IPR033471DIRP domain
SMARTSM011351.0E-56585686IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1120 aa     Download sequence    Send to blast
MASSRKVRNA NKRYAKINED WQDKDETNVH KSKVRKKKLS DMLGSQWSKD ELERFYGAYR  60
KYGKDWRKVA SAIRDRTSEM VEALYNMNKA YLSLPEGTAT AAGLIAMMTD HYNILDGSNS  120
DRESDDSPKA SRKPQKRGRA RFQSVSKTTD TRYPDLLQSQ PASSSYGCLS LLKKKRSVDL  180
LAGHRAVGKR TPRVPVANMY YRDDRGVANR QARTYANNGD DEGAHVAALA LAENADSEMG  240
SSKLHGFHMD ADYPEGSLGS REAETGDYSK GASFLVKNES LPSGKPQKKL KRSQKRRKKS  300
AHKSGDQFED DREACSGTEE GHRTRKVKDD SGLEALGWPR STSNKRSRQL FFGDESSALD  360
ALHTLADLSV NILQPSSVVE SESSAQIKDE NKDDDSDEKP GMPEAVSVYE QKVNSKNTAR  420
KVKRQSEISN PEIVTRKKPK LAKDPHHDGS TTSDGKQQPC TCGVKAEKKK RKMSTAKVSK  480
DEKSILKDVE KTEVSAEEGK VSSNKETTTQ GETTPQADFS SKGKSRRKIG IQQALTEECK  540
PTKGGDDTGS DKFSYSVNNV IDLKDKLSHC LSSRLLRRWC MFEWFYSAID YPWFAKSEFV  600
EYLNHVKLGH VPRLTRVEWG VIRSSLGKPR RLSKQFLHEE REKLSQYRDS VRQHYAELRS  660
GVREGLPTDL ARPLTVGQRV VACHPRTREL HDGNVLTVDS NRCRVQFDRP ELGVEFVMDI  720
DCMPLHPMEN FPESLRQQNI VNKYLSEVKL EDQMKEFCNG GATRFTSNVN VNGVDAALHI  780
PSGHPINTLM KQAKGDTIDS IIQAKATVNE VAVAAQQAMY NQPCSLSQIQ EREADIRALA  840
ELSRALDKKE ALLVELRHMN EEVSGKQKDG ETIRDLKHFR TQYAMVLVQL RDSNDQVASA  900
LLSLRQRNTY HGNQVQSYPT SMENGAFTGA PDPYNRFGYI NPDSGSQVIE VIESSRNRAK  960
MMVDVAVQAM CKVSEGENAF AKIGEALDNL NSRGTGSGSS ILGIRRIPPD SGQANTSHQD  1020
NGAAAPAAVN ICGARLPNGC DSEAQFPTEL ISSCVSTILM IQNCTEKQYH PAEVAHILDS  1080
ALSRLQPCSS QNIPIFREIE MCMGIIKNQM LALIPTPSG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289295LKRSQKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703938.10.0PREDICTED: protein ALWAYS EARLY 2 isoform X1
TrEMBLK3ZGY70.0K3ZGY7_SETIT; Uncharacterized protein
STRINGSi025839m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62302331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding